PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 320aa    MW: 34685.3 Da    PI: 4.5818
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.52.8e-16136228298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs.ksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +fqr+ws eD++ +L +l   + ++g+     ida+++++ +s++  v   + l  Ki  LK+++    k+ ksg+    +++hd+ if+++k+
  LPERR02G27970.1 136 AFQRVWSMEDDVRILEALAAHRREHGA--LPQIDALVSTLAGSLDHSVVdAKGLRGKISTLKRRYDAAAKR-KSGEL--PTNSHDRRIFDICKI 224
                      69*******************999995..57899**********98865167899**************99.66665..5799*********** PP

           DUF573  95 iWgs 98 
                      iWgs
  LPERR02G27970.1 225 IWGS 228
                      **95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.66E-6103113No hitNo description
PfamPF045046.1E-20137227IPR007592Protein of unknown function DUF573
SuperFamilySSF1014473.66E-6213232No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAPKRSAPPP PPPVASSDET ASGSDSDESE EEVEAPAALR APVVSNKGEE SESEEEEESE  60
EEGEDDMVRS SATQKRDPPP QNREEDESSG DEEGESSDSD KAPPPPPPPP PPPNPAPKQV  120
AAEGNGANIS SPKKPAFQRV WSMEDDVRIL EALAAHRREH GALPQIDALV STLAGSLDHS  180
VVDAKGLRGK ISTLKRRYDA AAKRKSGELP TNSHDRRIFD ICKIIWGSSD NAANVTTAGR  240
AAGREFSEMC ELYPHLGEEV KALEAAHPGL FKRDFGRLDD DKARALDMKV KKQRIAEITL  300
ELRRGDLTKE VTKVLAELVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-93PREDICTED: uncharacterized protein LOC4330871
TrEMBLA0A0D9VLK10.0A0A0D9VLK1_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g53150.11e-107(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.15e-10DNA-binding storekeeper protein-related transcriptional regulator