PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GeBP
Protein Properties Length: 298aa    MW: 31460.8 Da    PI: 10.5405
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.43.9e-1391178497
           DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      ++lws+ D ++lL G   f+a+tg  p   d+ a+y+ +++s+s ++ +  +  K++r+K K+ +           + + +h++ + +l+ ++W
  LPERR02G27810.1  91 KQLWSDADVVALLDGAAAFRARTGRVPRFpDMAALYDSIRGSLSPHIDQAKVYYKLKRIKGKYLHAAPG-------AAAGPHERRVRDLCASVW 177
                      689*********************966544**********************************99888.......678889999999999999 PP

           DUF573  97 g 97 
                      g
  LPERR02G27810.1 178 G 178
                      7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-1391178IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDATPAPTAP SPPRSSKKRS SRPKPHAGHP VPNPSPLPAA VAVAVAATSS SRNRERERKR  60
RQRSAFADPA TAATAVTAPA PAPGGGGGVQ KQLWSDADVV ALLDGAAAFR ARTGRVPRFP  120
DMAALYDSIR GSLSPHIDQA KVYYKLKRIK GKYLHAAPGA AAGPHERRVR DLCASVWGAD  180
LEPLAAAAVA AAEQPRAVPD AAAAAAAASD QPRSVPDAAA MLPVLTEMLD EYWKTDGRTL  240
SGVALEKGLS LLGTGEARFI ESKWRRQLDS EIQTQMRRHD LAKEVYALLM DAIKGLGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626514.11e-107PREDICTED: myristoylated alanine-rich C-kinase substrate
RefseqXP_015626513.11e-107PREDICTED: myristoylated alanine-rich C-kinase substrate
TrEMBLA0A0D9VLI40.0A0A0D9VLI4_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g52950.11e-107(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763