PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22320.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 213aa    MW: 23862.3 Da    PI: 10.0535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22320.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-0692114123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  LPERR02G22320.4  92 FVCEVCNKGFQREQNLQLHRRGH 114
                      89*******************88 PP

2zf-C2H213.40.00024169191123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  LPERR02G22320.4 169 WKCDKCSKRYAVQSDWKAHSKIC 191
                      58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.28E-891114No hitNo description
Gene3DG3DSA:3.30.160.602.2E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PfamPF121711.1E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.28E-8164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDSD HEDQIKPLFA QHHHQQQPVA PSNAGTAISA EGSVAGQAAA  60
AAPPVKKKRT LPDPDAEVIA LSPKTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKNPLQAQR RRVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKI CGTREYRCDC GTLFSRNALY MHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-22165211349Zinc finger protein JACKDAW
5b3h_F5e-22165211349Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22320.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824078.11e-116protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824079.11e-116protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824080.11e-116protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824082.11e-116protein indeterminate-domain 5, chloroplastic-like
RefseqXP_025824083.11e-116protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-90IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0D9VJC41e-159A0A0D9VJC4_9ORYZ; Uncharacterized protein
STRINGLPERR02G22320.11e-153(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.16e-90indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]