PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G20290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 680aa    MW: 73607.3 Da    PI: 6.8493
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G20290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23123224199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + 
  LPERR02G20290.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 212
                      89*****************************96555555..8************************************************..34 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  LPERR02G20290.1 213 DGGDLHVGIRRA 224
                      88999*****97 PP

2Auxin_resp113.81.6e-37274357183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ as +++Fe vY+Prast+eF+v+++ v++al+v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  LPERR02G20290.1 274 AARLASVGQPFEAVYYPRASTPEFIVRAAAVRAALRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 357
                      6788999***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-37114226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-29118226IPR015300DNA-binding pseudobarrel domain
CDDcd100175.44E-22122223No hitNo description
PfamPF023621.7E-21123224IPR003340B3 DNA binding domain
SMARTSM010192.7E-20123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689123225IPR003340B3 DNA binding domain
PfamPF065076.8E-32274357IPR010525Auxin response factor
PROSITE profilePS5174516.042594674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MITFADLAEP AAPGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HALGLATPEL  60
SAARVPALVP CRVAAVRYMA DPDTDEVFAR IRLVPLRAGE DGDVEDGDGV ATAEDQHEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVVAKDVHG VAWNFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG GGGEAEEAAS  240
HLPGWDQYGG LMRGNASPCA KGRGKVRAED VVEAARLASV GQPFEAVYYP RASTPEFIVR  300
AAAVRAALRV QWCPGMRFKM AFETEDSSRI SWFMGTVAGV QVADPIRWPQ SPWRLLQVTW  360
DEPDLLQNVK RVSPWLVELV PSMPAVHLSS FSPPRKKPRI PAYPEFPFEG QLLNPAFPPN  420
PLAHGHHPHH YPHPSFFPFP DVSAPAGIQG ARQAQFGPSL SDLHLTHLQS SLMYPGLRRP  480
DHVSPTTIPP RISTDLTMGG HGSPPARGDT VSCALSIGAK KPDDTKPLGL MLFGQRILTE  540
QQISLSGSSE KCANASEGSG SGVIQTSPTD NTSSERLQWF RENSAVSELG LLEPGRCKVF  600
IESDTVGRNL DLSALSSFEQ LYGRLSEMCG IDSAELRSRV LYRGATGEVK HAGDEPFSEF  660
IKLARRLTIL TDAGSDNLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-781937851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622752.10.0PREDICTED: auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A0D9VIK60.0A0A0D9VIK6_9ORYZ; Auxin response factor
STRINGBGIOSGA008657-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16