PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G19570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 711aa    MW: 74004.8 Da    PI: 6.692
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G19570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10303359155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  LPERR02G19570.1 303 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 359
                      57*******************5444.2455535555.7799999*************98 PP

2AP249.79.2e-16402453155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  LPERR02G19570.1 402 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 453
                      89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.41E-17303369No hitNo description
PfamPF008473.9E-8303359IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-14303369IPR016177DNA-binding domain
PROSITE profilePS5103217.108304367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-11304368IPR001471AP2/ERF domain
SMARTSM003805.8E-22304373IPR001471AP2/ERF domain
PRINTSPR003673.8E-6305316IPR001471AP2/ERF domain
PfamPF008473.2E-10402453IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-18402463IPR016177DNA-binding domain
CDDcd000181.62E-23402463No hitNo description
PROSITE profilePS5103219.467403461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-18403462IPR001471AP2/ERF domain
SMARTSM003808.1E-34403467IPR001471AP2/ERF domain
PRINTSPR003673.8E-6443463IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP HQDNSPPAAI DISSATDFYG LPTQPAADAH GLGVPGHHHN  60
ASYGIMEAFN RGAQETQDWN MRGLDYNGGA SELSMLVGSS GGKRAVDQEN GGEPKLEDFL  120
GGNSFVDSEQ DQAAAAAAAG GFLFSGVPMS STTTNSNSGS NTMELSMIKT WLRNNGQVPA  180
AGHHQSHPHQ QPATTQEAAA AAEMSTDASA SSFGCSSDAM GRSNNGAVSA AAAGGASQSL  240
ALSMSTGSHL PIVVAGGGGA AGAAESTTSS ENKRASGAMD SPGGGVIEAV PRKSIDTFGQ  300
RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEDKAARAY DLAALKYWGT  360
TTTTNFPISN YEKELDEMKH MTRQEYIAYL RRNSSGFSRG ASKYRGVTRH HQHGRWQARI  420
GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESSTLPVGG  480
AARRLKEAAD HADQLAAAGA TIWRAADMDG AGVGVISGLA DVGAAYASYH HHHHHGWPTI  540
AFQQQPSPLA VHYPYGGAAP PSRGWCKPEQ DAAVAAAAAA HSLQDLQQLH LGNAAHNFFQ  600
ASSSSTIYNG GGYQGVGGGG NGFLMPASTV VAGGGEHSST ATNQGSTCSY GGGGSEEQQG  660
KLIGYDAAMA MASAGGVYGQ LSQGSPASTV SIARANGGYS TNWSSPFNGM G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0D9VIA30.0A0A0D9VIA3_9ORYZ; Uncharacterized protein
STRINGBGIOSGA008619-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-121AP2 family protein