PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G18900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 292aa    MW: 30411.8 Da    PI: 8.3803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G18900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12228273655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  LPERR02G18900.1 228 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 273
                      689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723222272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16225287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-13226277No hitNo description
Gene3DG3DSA:4.10.280.106.9E-15227285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRRFLPVGVG GMEPTSSGQH GEAEAAGLRF GGGDISLGPH GSGGGGGHHL QDGSVDLLAR  60
HSSSPAGFFS NLMVSNGFPG SKAGGGGRGG TEAQQHHSMA NNSGSGSGSG RKMKSQMSFT  120
GGGPPHLAHI AEDGGGGGFH DRAGAEASVP RTFSAGGSSS GGGFSIVGPW EESRDIISTL  180
GGYESQFGGM ASTSALEMAG MDRYMQLQHD QVPFKVRAKR GCATHPRSIA ERERRTRISE  240
KLRKLQELVP NMDKQTSTAD MLDLAVEHIK GLQTQLQALK HEQEKCTCCN RP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G18900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-145transcription factor bHLH128 isoform X1
SwissprotQ8H1029e-53BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0D9VI000.0A0A0D9VI00_9ORYZ; Uncharacterized protein
STRINGLPERR02G18900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]