PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G16200.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 346aa    MW: 39495 Da    PI: 7.3571
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G16200.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000186688323
                     ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                     C+   Cgk+F +   L++H  +H
  LPERR02G16200.2 66 CSyeGCGKTFVDAGALRKHAHVH 88
                     77779**************9887 PP

2zf-C2H215.26.2e-0593117123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   C+k F ++s LkrH   H
  LPERR02G16200.2  93 YVCHyeGCDKKFLDSSKLKRHFLIH 117
                      9********************8877 PP

3zf-C2H220.81e-06123147123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk Fs   nLk H++tH
  LPERR02G16200.2 123 FICPheGCGKAFSLDFNLKAHMKTH 147
                      78**********************9 PP

4zf-C2H213.40.00023153178123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   C ++F++ s L+ Hi+  H
  LPERR02G16200.2 153 HVCKypECARRFTQESKLRAHIKQqH 178
                      789999****************9877 PP

5zf-C2H212.10.00061221246123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   C k + + + L+ H+++ H
  LPERR02G16200.2 221 YVCPydGCAKAYIHEYKLNLHLKKeH 246
                      99*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-145990IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9286493IPR007087Zinc finger, C2H2
SMARTSM003550.00216488IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-66589No hitNo description
PROSITE patternPS0002806688IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-1491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003693117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.15293122IPR007087Zinc finger, C2H2
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
SuperFamilySSF576673.4E-14104156No hitNo description
Gene3DG3DSA:3.30.160.604.4E-20114148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-4123147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.217123152IPR007087Zinc finger, C2H2
PROSITE patternPS000280125147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-6149176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.118153178IPR007087Zinc finger, C2H2
SMARTSM003550.049153178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-8214243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.24E-5215244No hitNo description
PROSITE profilePS501578.85221251IPR007087Zinc finger, C2H2
SMARTSM003550.012221246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQVAAHRRHH RWVKEWVPQD LVVAGGPCLL YKWVREDRLS ALKSKDKEQG AEVAKSEPTT  60
EVLFLCSYEG CGKTFVDAGA LRKHAHVHGE RQYVCHYEGC DKKFLDSSKL KRHFLIHTGE  120
KNFICPHEGC GKAFSLDFNL KAHMKTHSAD NYHVCKYPEC ARRFTQESKL RAHIKQQHEK  180
GGLQNPGESA TNRSVAGDHS HNNNTPKLSA TPPVPSADRP YVCPYDGCAK AYIHEYKLNL  240
HLKKEHPNHY QDAGAQAASS KSHMSKRRSK PVMTDKMPLP KIPKRRGYTV PPPYQPVNVV  300
EEHQWPRNEQ YEDDSEETEE EGDNVEDGTR YRAASSDDDE ETEDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-33591748122PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279285PKIPKRR
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G16200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1037600.0AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627689.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-103YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0D9VGZ20.0A0A0D9VGZ2_9ORYZ; Uncharacterized protein
STRINGLPERR02G16200.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-104C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]