PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G04280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 918aa    MW: 101811 Da    PI: 6.3184
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G04280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24139240199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  LPERR02G04280.1 139 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 228
                      99*****************************86555544..8************************************************..78 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  LPERR02G04280.1 229 DSNQLLLGIRRA 240
                      78889***9997 PP

2Auxin_resp121.18.2e-40265348183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  LPERR02G04280.1 265 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 348
                      79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48124268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-42131254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-21138239No hitNo description
PROSITE profilePS5086313.098139241IPR003340B3 DNA binding domain
PfamPF023624.6E-23139240IPR003340B3 DNA binding domain
SMARTSM010193.3E-25139241IPR003340B3 DNA binding domain
PfamPF065071.9E-34265348IPR010525Auxin response factor
PfamPF023099.8E-8780872IPR033389AUX/IAA domain
SuperFamilySSF542771.5E-7784863No hitNo description
PROSITE profilePS5174524.082787871IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MKLSPSAATG GGGSLPDQPA SPPEVAEEQK CLNSELWHAC AGPLVSLPAV GSRVVYFPQG  60
HSEQVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPQELK  120
DPFLPAELGT ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELM  180
AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDS NQLLLGIRRA  240
NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY  300
HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWQ NSHWRSVKVG WDESTAGERQ  360
PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP TGLPSLYGGK EDDLTSSLMW LRDGQNSGFQ  420
SLNFGGLGMS PWMQPRLDTS LLGLQPDMYQ TIAAAAALQN TTKQVSPAML QFQQPQNIVG  480
RSLLSSQVLQ QAQPQFQQMY HQNINDNTIQ GHGQPEYLQQ SLQHCQSFNE QKPQLQPQQQ  540
HQESHQQQPQ CVQTPQHQQM QQQKHLSNFH PVPNALSVFS QLSSTPQSAP STLQTVSPFS  600
QQHNFPDTNI SCLSPSNVSS MHNALRPFPS EAASDLPGVP RITPVPVSDP WSSKRVAMES  660
AITSRPHAIS SQMENFDLTP SSIPQNSTLA PLPGRECLVD QDGGSDPQNH FLFGVNIDSQ  720
SLLMQDGIPS LHNDNVSNTI PYSTSNFLNP SQNDYQLNQT LTSPGCLDES EYAPCSDNAD  780
QVKRPPATFV KVYKSGTVGR LLDITRFSSY HELRSEVGRL FGLEGQLEDP LRSGWQLVFV  840
DREDDVLLVG DDPWQEFVNS VSCIKILSPQ EVQQMGKPGI ELFSTSARRL GNSCDNYMSR  900
QESRSLSTGI ASVGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1603236951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705690.0AK070569.1 Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646917.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D9VCJ70.0A0A0D9VCJ7_9ORYZ; Auxin response factor
STRINGOB02G14210.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6