PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 268aa    MW: 28926.9 Da    PI: 5.4009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06244267123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ C+k+F++++ L+ H +  H
  LPERR01G35760.1 244 YACKSCNKTFNSSMGLEAHSKAkH 267
                      89*****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.946244268IPR007087Zinc finger, C2H2
PROSITE patternPS000280246267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
METNMGFWGI VVRPGETVKC DPPGELYYHI SQIALEPGEL SENVHVFVEV DGDESDEEVP  60
LAIPLYPRLD DDKVKEAQHS PSKLSGHKYA AAAASPIPEV VVPERKNYGK RKADDKVSDE  120
EDGDDSGVGE SDDDEDSSDD GESSDEEETP LKGKNRPVET PLKTPPQKKM KLATPIMSKA  180
GTGTSRSGGG YVHVATPHPA KQAKKTAGNN DMFKKSAGYV HVATPHPAKR TPANNDMSKH  240
SDGYACKSCN KTFNSSMGLE AHSKAKHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411217e-50AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694821.11e-88PREDICTED: histone deacetylase HDT2-like
TrEMBLA0A0D9V9B10.0A0A0D9V9B1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA005017-PA1e-115(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-11histone deacetylase 2C