PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 711aa    MW: 72569.1 Da    PI: 7.0572
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11270326155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  LPERR01G35180.1 270 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 326
                      57*******************4444.2455535555.779999**************98 PP

2AP246.78.2e-15369420155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  LPERR01G35180.1 369 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 420
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-17270336No hitNo description
SuperFamilySSF541717.85E-15270336IPR016177DNA-binding domain
PfamPF008475.3E-9270326IPR001471AP2/ERF domain
SMARTSM003809.2E-23271340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-12271335IPR001471AP2/ERF domain
PROSITE profilePS5103217.385271334IPR001471AP2/ERF domain
PRINTSPR003673.8E-6272283IPR001471AP2/ERF domain
CDDcd000186.74E-23369430No hitNo description
SuperFamilySSF541711.11E-17369430IPR016177DNA-binding domain
PfamPF008471.0E-9369420IPR001471AP2/ERF domain
SMARTSM003801.5E-33370434IPR001471AP2/ERF domain
PROSITE profilePS5103219.045370428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18370429IPR001471AP2/ERF domain
PRINTSPR003673.8E-6410430IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPS QANSSLISAA ATAAGDSSAG EVCFNIPQDW SMRGSELSAL  60
VAEPKLEDFL GGISFSEQQH HGKGGGSGVI PSSAAAAAAC YASSGSSVGY MYPPPSSSSL  120
QFADSVMVAS SSSPVVHDGG GMVNGGGGGG GNGGIGLSMI KNWLRSQPAP APQPQALSLS  180
MNMAGTVTAT ALLAGGGGER GRVLPAAESL STSAHGAVTS CGRKENSVEE GSGSAGAVVA  240
VGSESGGGAV VEAGAATARK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR  300
KGRQGGYDKE EKAARAYDLA ALKYWGPTTT TNFPVNNYEK ELEEMKHMTR QEFVASLRRK  360
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG  420
LNAVTNFDMS RYDVKSILDS AALPVGAAAA KRLKDAESAA AAAVSGYDIT PAASTPPRTE  480
PTTTSCTPPP GTPKNDAVSH SVLPPLTPPP SYYNNKVSSA VAGGGGGMYH PYGAVAAQAV  540
RGGGWCKQES DHAVIAAAHS LQDLHHFNLG AGAGVAVAGA HDFFSSAAAM QQQHGLAGGG  600
SIENAAAASL EHSTGSNSVV YNGDGGGGYM MPVSAAATAV ASHHDHGGDG GGKHVQMGYD  660
SYLVGGDAYG GGRLPPTAWA PASAAPAATS SSDMTAVSHG GAQLFSVWND T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408920.0AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634444.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0D9V9330.0A0A0D9V933_9ORYZ; Uncharacterized protein
STRINGBGIOSGA000316-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-115AINTEGUMENTA-like 5