PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G34400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 355aa    MW: 38016.4 Da    PI: 5.9497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G34400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C  C+k+F+ +     H+r+H
  LPERR01G34400.1 114 YPCRVCNKVFTGRKAVDGHMRVH 136
                      99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0015114136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4114140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.113114141IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-5114141No hitNo description
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM0035519227251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229251IPR007087Zinc finger, C2H2
PfamPF139122.1E-8251275IPR007087Zinc finger, C2H2
SMARTSM0035525252273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEDEASSSNG RRRCPYPWEE EEIEEGEIRR GGGGYYDSGS DTDDDGGGDV VVGEYKRRRV  60
DGLLSLRLPS PTPSSDSESE GTISDDGEEE EIIAGGAGDA APAAKQQQRV PFDYPCRVCN  120
KVFTGRKAVD GHMRVHQREK ISLPSHLPAA STGKRRRAMT VASFAPNSGE ARHGGNSMAI  180
VIAAEPALPV AAIAGGHHRH NALALMPGGG GAAARGVGRG GDRGPPYKCW YEGCNQEYIT  240
HQGLGGHGKK HRCKVCEAEF LTGVALGGHM RKHYEGNKKK KQQQEDDVDL TLTLAPPRQV  300
LAMPALPPPA AAEPKEEVLQ VEAEAEPTPE PEPEAAPMPA NGRRILRIFG VDIEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15559KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G34400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V8S50.0A0A0D9V8S5_9ORYZ; Uncharacterized protein
STRINGLPERR01G34400.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-07C2H2 family protein