PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G33350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 517aa    MW: 56929.8 Da    PI: 5.3512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G33350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06278299223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  LPERR01G33350.1 278 FCLICGKGFKRDANLRMHMRGH 299
                      5*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-5275302No hitNo description
SMARTSM003550.012277299IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552277304IPR007087Zinc finger, C2H2
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-5279303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035568326359IPR015880Zinc finger, C2H2-like
SMARTSM0035522364386IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDSSLRRSSE TSLKALPSVA RNTDPDQQGV RFNSMDQPYF ARPGQSFPAF PPLFGVQSSS  60
LYIPDDIEAK IGSQFESNPS LNNPTMDWDP QAMLSNLSFL EQKIKQVKDI VQSMSNRESQ  120
VAEGSSEVQA KQQLVTADLT CIIIQLISTA GSLLPSMKNP LSSNPALRHL SNTLGAPMVL  180
GTSCNQRPST NDEATIPDIT KTSEYEELMN TLNTTQDEGD EIMKCQNPCG GEGSEPVPME  240
DHDVKESDDG GEGENLPPGS YVVLQLEKEE ILAPHTHFCL ICGKGFKRDA NLRMHMRGHG  300
DEYKTPAALA KPSKDSSSEP APVTRYSCPY VGCKRNKEHK KFQPLKTILC VKNHYKRSHC  360
DKSYTCSRCN TKKFSVIADL KTHEKHCGRD KWICSCGTTF SRKDKLFGHV ALFQGHTPAL  420
PMDDIKLPGA SEQPQDSEAM NNMVGSVGYN FPGSSSDDIP NLDMKMADDP RYFSPLSFDP  480
CFGGLDDFTR PGFDISENPF SFLPSGSCSF GQQNGES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G33350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196290.0AK119629.1 Oryza sativa Japonica Group cDNA clone:002-130-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641300.10.0zinc finger protein STOP1 homolog
RefseqXP_015641307.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0D9V8D10.0A0A0D9V8D1_9ORYZ; Uncharacterized protein
STRINGLPERR01G33350.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-160C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]