PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G32600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 350aa    MW: 38405.3 Da    PI: 6.6868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G32600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05193212120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  LPERR01G32600.1 193 FVCHVCNKNFNRYNNMQMHM 212
                      89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-5189216No hitNo description
PROSITE profilePS5015710.138193220IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-5193212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576674.16E-5261297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGLRTCSAME GEVVAASPFF EWLKPPPPPP PSSSSWSSSF SSSSSMASRD QEGEDGGVGG  60
VQEDHSGLTC LPLLSMLEEG KRPEYPVKEE IQEPGVELNI GLPVSGSGAK DVTMEEEDDD  120
DDVGDEEMDE WMKPMHGGCK VEGEDGEAVA SVEGSSSVSV GEFGGVGAES GVAMSSRYWI  180
PTPAQILIGP VQFVCHVCNK NFNRYNNMQM HMWGHGREYR KGPESLKGTQ TLAMLKLPCY  240
CCAAGCKNNI AHPRARPLKD FRTLQTHYKR KHGAKPFRCR RCAKPFAVKG DWRTHEKNCG  300
KRWFCACGSD FKHKRSLNDH VRSFGAHHLP VAEPAAAAIA DKDRIISFQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G32600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625834.10.0protein TRANSPARENT TESTA 1
TrEMBLA0A0D9V8080.0A0A0D9V808_9ORYZ; Uncharacterized protein
STRINGLPERR01G32600.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.14e-91WIP domain protein 4