PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G29770.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 439aa    MW: 47898.7 Da    PI: 6.9747
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G29770.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.27.6e-08181204528
                      CHHHCHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaei 28 
                      k  rr+++NReAAr+sR+RKk e+
  LPERR01G29770.2 181 KTLRRLAQNREAARKSRLRKKIET 204
                      788*****************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-6172211No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
PfamPF141443.7E-33237311IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MESRLGVPVS SAAAAENARG GMSGFAAPQH ATHNNMQPSQ VTDFGALAQS AGFRIEDLTN  60
LSTNTLFNLK SNAHTIINDS LQFGNYGKSI SPSNITTTAA VPVVDPEALV PQKGAQLNLV  120
TIRTGNVENW GESTMADTSP RTDTSTDPDT DERNQMFEQG QLADPTASDS SDRSKDKLDH  180
KTLRRLAQNR EAARKSRLRK KIETYSVRAR ASSGSSTGAL AFDMEYARWL EEHNKYINEL  240
RAAVNAHASD TDLRSIVDNI MAHYDEIFKL KGVAAKADVF HVLSGMWKTP AERCFMWLGG  300
FRSSELLKLL AGQLEPLTEQ QLAGIANLQQ SSQQAEDALS QGMEALQQSL AETLASGSLG  360
PAGSSGNVAN YMGQMAMAMG KLGTLENFLR QADNLRLQTL QQMQRILTTR QSARALLAIS  420
DYFSRLRALS SLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G29770.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0512970.0AB051297.1 Oryza sativa OsNIF4 mRNA for bZIP transcription factor, complete cds.
GenBankAY6204150.0AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644874.20.0PREDICTED: transcription factor HBP-1b(c1)-like isoform X2
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0D9V6X30.0A0A0D9V6X3_9ORYZ; Uncharacterized protein
STRINGLPERR01G29770.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-112bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]