PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G29260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 233aa    MW: 24182.4 Da    PI: 9.7304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G29260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-213384156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  LPERR01G29260.1 33 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 84
                     68********.**********83...36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-143383IPR001471AP2/ERF domain
CDDcd000185.91E-193391No hitNo description
SuperFamilySSF541718.5E-233492IPR016177DNA-binding domain
SMARTSM003802.2E-373497IPR001471AP2/ERF domain
PROSITE profilePS5103224.3683491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-323491IPR001471AP2/ERF domain
PRINTSPR003673.2E-113546IPR001471AP2/ERF domain
PRINTSPR003673.2E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAPRAAVTME KVAVAPPTGL GLGVGGGVGA GGPHYRGVRK RPWGRYAAEI RDPAKKSRVW  60
LGTYDTAEEA ARAYDAAARE FRGAKAKTNF PFASQSMGDC SGSPSSNSTV DTVGGVQTPM  120
QAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFKGYPVARP AVHPYFFYEQ AAAAAAAGYR  180
MMKLASPVTV AAVAQSDSDS SSVVDLAPSP SAVTANKAVA FDLDLNRPPP VEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-223096168ATERF1
3gcc_A1e-223096168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622082.11e-104PREDICTED: ethylene-responsive transcription factor 8
TrEMBLA0A0D9V6R31e-167A0A0D9V6R3_9ORYZ; Uncharacterized protein
STRINGORGLA01G0278100.11e-105(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-21erf domain protein 9