PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G28060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 244aa    MW: 25701 Da    PI: 6.7647
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G28060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.42.6e-34401541100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf...............paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                      +C aCk+lrr+C+++Cv+ap+f                ++ +++fa+vh++FGasnv kll+++p   r+da+++++yeA+ar+ dPvyG+vg+
  LPERR01G28060.1  40 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagagrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVGT 133
                      7*******************************9988555559**************************************************** PP

           DUF260  80 ilklqqqleqlkaelallkee 100
                      il+lq+q++ l+ +l++l+++
  LPERR01G28060.1 134 ILALQHQVSVLQGQLSVLESQ 154
                      ***************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.63839155IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3840152IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MHAAQPTGSS KRRVGAAPAV ERPAAAEEEE ASSSAGPGAP CGACKFLRRR CVPGCVFAPH  60
FSGCGGSGVG AGAGRGRERG AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ  120
ARIADPVYGS VGTILALQHQ VSVLQGQLSV LESQLFNLRL ALASAHPDTP QHFVVLQPAC  180
SAASTPNQVA VNYDDLPQAV DFMDAEPALR GIETLQLSQP LRREEDESCQ DMNLFAESVE  240
QRQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630092.11e-123PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV32e-47LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0D9V6A31e-176A0A0D9V6A3_9ORYZ; Uncharacterized protein
STRINGORGLA07G0240800.11e-124(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-39LOB domain-containing protein 20