PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G26900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 438aa    MW: 46603.9 Da    PI: 6.8005
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G26900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.54.3e-33111231189
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnss 86 
                      aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai++l++         +++++se ++++   +++   
  LPERR01G26900.1 111 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDDLPDRaeaapppaGTTTESEPQPDQATTEQA--- 201
                      689**************************************************************77655555222222222222222221... PP

              TCP  87 sg............................k 89 
                       +                            +
  LPERR01G26900.1 202 -TstsygfggnngagamttfphslgdaagaD 231
                      .011223444445555555544444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-31113226IPR005333Transcription factor, TCP
PROSITE profilePS5136932.444114172IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MELSCGGELK LEEDKNQLSK GLDPWAASNP TASASTLHYL LQEKEREQLQ IYQQHGFGSF  60
LQHHHRRQQQ QQPAAARGPG ADGGSSGEST PVAAVDALAT AFGAGRIVRS AAGRKDRHSK  120
VCTARGLRDR RVRLAAHTAI RFYDVQDRLG YDRPSKAVDW LMRNAKAAID DLPDRAEAAP  180
PPAGTTTESE PQPDQATTEQ ATSTSYGFGG NNGAGAMTTF PHSLGDAAGA DRVSDSVKSL  240
FPSSSTAATA AGAGHDEYRG SPPDLLSRTT SSRQPQELCL TLQSNQHHHQ IFGHVSANDH  300
HGMISSAGNW SDHHHSQRMP SSWHAPENST GDGRGGDSYM FAMPARQGLD QSQLFSHGEP  360
LQSSGSGWAV SSSRTWLDPL AVAAIHQHQQ STMAAGQVGF GHLVGSGGGG GGFMGFLAPA  420
AHRIQGEEEN GSEVMRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-20119173155Putative transcription factor PCF6
5zkt_B6e-20119173155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G26900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-147CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639296.10.0transcription factor PCF7
SwissprotQ8LT050.0PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A0D9V5S90.0A0A0D9V5S9_9ORYZ; Uncharacterized protein
STRINGLPERR01G26900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-37TCP family protein