PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G23470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family RAV
Protein Properties Length: 381aa    MW: 40248.4 Da    PI: 9.6443
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G23470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-1273121155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  LPERR01G23470.1  73 SKFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 121
                      79****9888.8*********......44**********99*************98 PP

2B398.44.3e-31207302187
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.. 85 
                      f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F++   
  LPERR01G23470.1 207 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRAaa 300
                      89*******************************5556799*************************************************94422 PP

                      SS CS
               B3  86 gr 87 
                      g+
  LPERR01G23470.1 301 GD 302
                      44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.84E-2273129No hitNo description
SuperFamilySSF541717.85E-1673129IPR016177DNA-binding domain
PfamPF008471.6E-773121IPR001471AP2/ERF domain
SMARTSM003809.2E-2574135IPR001471AP2/ERF domain
PROSITE profilePS5103219.20374129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-1974129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-38201312IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-29205310No hitNo description
SuperFamilySSF1019362.35E-30205299IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-21207306IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578207316IPR003340B3 DNA binding domain
PfamPF023625.6E-28207307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSSSSLVDD TNSGGGGSGS SSTDKLRALV AAAAETAPLE RMGSGASAVV DAAEPGAEAD  60
SGGRVVGGKL PSSKFKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR AYDVAAQRFR  120
GRDAVTNFRP LADADPDAAA ELRFLAARSK AEVVDMLRKH TYFDELAQSK RALLAAFTPS  180
SAATTTPAAS LIPSPRSPAA AARQHLFDKT VTPSDVGKLN RLVIPKQHAE KHFPLQLPSA  240
GGESKGVLLN FEDAAGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLHAG DVVGFYRAAA  300
GDDDGGKLFI DCKLVRPTSA AVADQAAASP AVKNSIRLFG VDLLMAPTPD EHLAGCKRAR  360
DLATTPQAAA LKKQCIELAL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4820631313115DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G23470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419840.0AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence.
GenBankAP0034500.0AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622542.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A0D9V4F90.0A0A0D9V4F9_9ORYZ; Uncharacterized protein
STRINGLPERR01G23470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-100related to ABI3/VP1 2