PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 388aa    MW: 42666.6 Da    PI: 5.9007
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26039.31.8e-121452139
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGa 39
                     +CaaC++lrr+C++dC l p+fpa++p++f+n+ + F+ 
  LPERR01G17370.1 14 PCAACAHLRRTCSRDCKLVPHFPADRPERFRNAFRHFRI 52
                     7**********************************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.4E-91450IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MADPSASGSS QYPPCAACAH LRRTCSRDCK LVPHFPADRP ERFRNAFRHF RIGENRDGFD  60
FDNYIGQMNR LSDLRLRLIH EQRRQELLRP QHQPPPPDLP RGLPLADGRA PNSSSSSSGG  120
GPRHPQCAAC AYLGWVCSPE CKLEPYSEAV SLCGLSTSSS TPTASLPQCQ KCGLQRRLCE  180
MGCNLKCMDL SGVKFLLESA KAAFPADSTT TASQYPQSGS SSTTTVDHQR ERHDHRRRLF  240
RAHPLTTDFS AYALRPTPTS PATVHENAES STAKANRSSV FGVLNDPVNE NDPMAAMMES  300
FMSAMNTTHP PPPTTTSTSD DEDIGKYLVD DAYTAEEEPA APAEPVGIDE LPRPMSPMTL  360
ANVRLAKELL EQEEQLVAPP FDERHDDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V2670.0A0A0D9V267_9ORYZ; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-09LOB domain-containing protein 4