PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 186aa    MW: 20613.9 Da    PI: 9.2558
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.35e-14301402100
           DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.............edamsslvyeAearardPvyGavgvilk 82 
                      Ca+C +l+ +C + C  apyfpa++ ++f ++ +lFG +++++ l+a   + r             +  m+++v  ++a + +P +   ++ l+
  LPERR01G17330.1  30 CASCTHLGLTCRPRCRTAPYFPADRLERFLYACRLFGLKTIVRSLRAE-ADGRmgecrwfwnksnkTPSMAAIVLLSDAAVAEPERVIRKFELH 122
                      *********************************************995.333445666777777668899999999999999999999999999 PP

           DUF260  83 lqqqleqlkaelallkee 100
                       q++l+++++ l+++ ++
  LPERR01G17330.1 123 RQRRLQCKANRLQKQSQQ 140
                      999999999888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.34528141IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-1130135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSTSTALAPP AGRPPCAART HVDAAPRPTC ASCTHLGLTC RPRCRTAPYF PADRLERFLY  60
ACRLFGLKTI VRSLRAEADG RMGECRWFWN KSNKTPSMAA IVLLSDAAVA EPERVIRKFE  120
LHRQRRLQCK ANRLQKQSQQ PRQQPAMLPD PYAVVAMETV YDSTSDMDAD AGLATCLQML  180
CLSSAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V2631e-135A0A0D9V263_9ORYZ; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-09LOB domain-containing protein 22