PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 255aa    MW: 27201.5 Da    PI: 5.844
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.2e-37411441100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                      aCaaCk++rrkC+++C lapyfpa++p++f+n+h+lFG +n+l+++k++     +e+r+da++s++ye++ar  dPv Ga+g+ +kl+ +l++l
  LPERR01G17320.1  41 ACAACKHQRRKCTPECELAPYFPADRPARFRNAHRLFGIKNILRIMKKAnalgGQETRDDAATSVIYESDAREADPVFGAAGIARKLSLELNSL 134
                      7**********************************************9966666788************************************* PP

           DUF260  91 kaelallkee 100
                      +aela+++++
  LPERR01G17320.1 135 EAELAAVRSQ 144
                      ******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.11240145IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3341142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVDGEDGASS SGHSHSSNTG TPQPQPHELQ PAPPPPPPNQ ACAACKHQRR KCTPECELAP  60
YFPADRPARF RNAHRLFGIK NILRIMKKAN ALGGQETRDD AATSVIYESD AREADPVFGA  120
AGIARKLSLE LNSLEAELAA VRSQVESFRR AAAAQQPRPP APTAATALVV PQAGLNLNPI  180
AQAPYFPPPM AAMMLQEQTA ANQVHVAAPD DVHQPVDDYI VEPLDAVDAA TITTAAERHE  240
DDRAPLARAT TEKAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V2620.0A0A0D9V262_9ORYZ; Uncharacterized protein
STRINGORGLA01G0167100.14e-44(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158291113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-22LOB domain-containing protein 22