PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 500aa    MW: 53147.1 Da    PI: 8.321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-0690112123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F r  nL+ H r H
  LPERR01G17290.1  90 FVCEICGKGFQRDQNLQLHRRGH 112
                      89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-789112No hitNo description
SMARTSM003550.01290112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.61490112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-590112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355130133163IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.4E-7163188No hitNo description
SMARTSM00355160168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MFHHHLQQQQ QQGLFLLEET DTDAAASADQ QQESSMSNLT SSASAAAPPL SSAAAAANNN  60
KRKRSLPGNP DPEAEVVALS PATLMATNRF VCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RGTSKEAVRK KVYICPEASC VHHDPSRALG DLTGIKKHFF RKHGEKKWKC DKCSKKYAVH  180
SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALT EESAKAIGVG AMPAAAMAAA  240
PGHHHHHPLL FSAPPVMAHH DLAALQDQHH HHDVMQSPHQ QQQQQLQSCG YGAVKPEMAP  300
WPAMNYDSHH PLLTQPLCNA SAPQSSATSA APPPPATAAA AAHLSAXCVQ PKHPYKNPKT  360
GAHYAHQMAG AGGGATFGLG LSCLNNNEGG GNGLAAAAGV MAQMARAASS HGRNGEDGGG  420
GGGGTGGGGG DGMTRDFLGL RAFSHRDMLL AGFDSSYVNA ATNAGAMACY EPPQHGQPQN  480
QQQQHHGSSN EPWHGMGGHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34164225364Zinc finger protein JACKDAW
5b3h_F6e-34164225364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2892090.0AK289209.1 Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
TrEMBLA0A0D9V2590.0A0A0D9V259_9ORYZ; Uncharacterized protein
STRINGLPERR01G17290.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-93C2H2-like zinc finger protein