PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G15290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 330aa    MW: 35167.9 Da    PI: 5.1212
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G15290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.36.6e-304106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+  +q
  LPERR01G15290.1   4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWPACQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      +++e++l +
  LPERR01G15290.1  98 AAVEAVLKG 106
                      ***998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2843109IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWPACQAAV EAVLKGDPVV QVSSEAAAAA  120
QATPPLRAYD IRHVAKDAEA DAAANLLRVA RGAGGGRTRF KRASSTSNPK ADKRRAASPS  180
SSTHDDTDAA VVVADHDDDH LHHPEMLSHH HEESAGSHDH DHDDDDHVVD DGDNNDMAVD  240
DVPPPPARAG SEDTEVEAGS HVSQAEQSPL PAEHEEEQEE VGLELTLGFQ PLVVRAASRR  300
SASAEAEARC DLSGLSAESS RIGLRLELPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174PKADKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628244.11e-147PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8861e-81LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0D9V1H00.0A0A0D9V1H0_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g32770.11e-146(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-65LOB domain-containing protein 41