PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G10700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 342aa    MW: 38524.2 Da    PI: 6.2548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G10700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.2e-114494353
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
                     + k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+   ++ +
  LPERR01G10700.1 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQSN 94
                     56889**************************99999888877765555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-93793No hitNo description
SMARTSM003389.6E-842106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384488IPR004827Basic-leucine zipper domain
PfamPF001705.0E-84594IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.17E-74696No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141441.0E-20119180IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADMSPRTDT STDDTDDNHM LEPGQAAIVA ASDSSDRSKD KHEDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQSNNTVFHT GALAFDVEYA RWLEEHNRQI  120
NELRSAVNAH ASDDELRSVV TKIMSHYEEI FKQKGSAAKA DVFHVLSGMW KTPAESIPFL  180
VIEEHAISSY DHYLFADEFT DELDLLKVRK LQLLSTQLEP LTEQQLSGIA NLQQSSQQAE  240
DALSQGMEAL QQSLAETLAG SLGSSGSTGN VANYMGQMAM AMGKLGTLEN FLRQADNLRQ  300
QTLQQMQRIL TTRQSARALL VISDYSSRLR ALSSLWLARP KE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G10700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0512961e-180AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBankAK2427431e-180AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBankHM9911681e-180HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBankKM0965711e-180KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644064.10.0PREDICTED: transcription factor HBP-1b(c38) isoform X1
RefseqXP_015688196.10.0PREDICTED: transcription factor HBP-1b(c38) isoform X1
SwissprotQ0JNL30.0TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBLA0A0D9UZQ90.0A0A0D9UZQ9_9ORYZ; Uncharacterized protein
STRINGLPERR01G10700.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-108bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]