PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G07720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 761aa    MW: 82262 Da    PI: 9.8255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G07720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12607653455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  LPERR01G07720.1 607 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 653
                      799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-49203388IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831603652IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-19606670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-15606657No hitNo description
PfamPF000104.9E-10607653IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18607666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16609658IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MIKAAALDPT HWLVVRAGSS AGSARDPIPA RGRKGRAPFL LLSHLSPTSQ IASLLPPPEI  60
PSRTRETRGI TTCEFGELGS GPRRRGGEIL GRRPRRGVVV GFGGGRARFL VCGRGGASGG  120
RSSPAPPVLD SVAIRAREPK SGIMVMKMEA EDDGANGGTR GTWTDEDRAL SASVLGTDAF  180
AYLIKGGGAS SEGVADATLP VDLQNRLQEL VESERPGAGW NYAIFWQLQR TKSGDLVLGW  240
GDGSCREPRD GEMGPAASAG NDEAKQRMRK RVLQRLHSAF GGADEEDYAP GIDQVTDTEM  300
FFLASMYFAF PRRAGGPGQV FAAGVPLWIP NTERNVFPAN YCYRGYLANA AGFRTIVLVP  360
FETGVLELGS MQLVAESSDT LQTIRSVFSG AIGNKAGVQR HEGNGSSEKS PGLAKIFGKD  420
LNLGRPSASP GVGVSKADER SWEQRTAAAG SSLLPNVQRG LQNFTWSQAR GLNSHQQKFG  480
NGILIVSNET TPLNNGVVDS PTATQFQLQK APPLQKLPQL QKPQQLVKPQ QLVSQQQLQP  540
QAPRQIDFSA GTSSKPGVLT KRPAGIDGES AEVDGLCKEE GPPPAIEDRR PRKRGRKPAN  600
GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQKKLKEME  660
AERERLLESG MVDPRERTPR PEVDIQVVQD EVLVRVMTPM ESHPVRTIFQ AFEEAEVHAG  720
ESKITSNNGT AVHSFIIKCP GAEQQTREKV IAAMSRAMSS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-252033899193Transcription factor MYC3
4rqw_B6e-252033899193Transcription factor MYC3
4rs9_A6e-252033899193Transcription factor MYC3
4yz6_A6e-252033899193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1588596RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8330460.0CT833046.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA221E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643964.10.0PREDICTED: transcription factor bHLH13
TrEMBLA0A0D9UYK90.0A0A0D9UYK9_9ORYZ; Uncharacterized protein
STRINGOB01G18800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.33e-70bHLH family protein