PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G02380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family RAV
Protein Properties Length: 349aa    MW: 37515.5 Da    PI: 10.2857
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G02380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-1360108155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  LPERR01G02380.1  60 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFADEEAAARAYDVAALRYRG 108
                      78****9888.8*********......44*************************98 PP

2B392.82.5e-29175278189
                      EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k+ tpsdv+k++rlv+pk++ae+h                  + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++++L +gD+
  LPERR01G02380.1 175 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrrssdaaaaaasPAATSKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKNLAAGDT 268
                      89****************************9999888877744445999********************************************* PP

                      EEEEE-SSSE CS
               B3  80 vvFkldgrse 89 
                      +vF+++    
  LPERR01G02380.1 269 IVFSRSAYGP 278
                      ****765444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-860108IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1760116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-2061116IPR001471AP2/ERF domain
SMARTSM003803.4E-2361122IPR001471AP2/ERF domain
PROSITE profilePS5103221.19361116IPR001471AP2/ERF domain
CDDcd000182.07E-1261116No hitNo description
Gene3DG3DSA:2.40.330.101.6E-38170292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-29172289IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-27173274No hitNo description
SMARTSM010198.1E-22175287IPR003340B3 DNA binding domain
PROSITE profilePS5086313.408175287IPR003340B3 DNA binding domain
PfamPF023626.1E-27175279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGVESVPMSS SSISSGASTA TTVSDGAVHL SPAEETVLPA VTSTAATATA TATAATQQSS  60
RYKGVVPQPN GRWGAQIYER HARVWLGTFA DEEAAARAYD VAALRYRGRD AATNFAGESA  120
SAAELAFLAA HSKAEIVDML RKHTYADELR QGLRRGRGVG ARAQPTPSWA REPLFEKAVT  180
PSDVGKLNRL VVPKQHAEKH FPLRRSSDAA AAAASPAATS KGVLLNFEDG EGKVWRFRYS  240
YWNSSQSYVL TKGWSRFVRE KNLAAGDTIV FSRSAYGPEK LLFIDCKKTK STAPPPPIEA  300
AQRVVKLFGV DIAGGDCRKR PAEMGKEAFL IKRQCVVHQR APALGALLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4817228711115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G02380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622259.11e-160AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-161Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A0D9UWK50.0A0A0D9UWK5_9ORYZ; Uncharacterized protein
STRINGLPERR01G02380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-81related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]