PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G02360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family RAV
Protein Properties Length: 305aa    MW: 33758.8 Da    PI: 9.2629
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G02360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.2e-124997155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     s+ykGV   + +grW A+I++      r  r++lg+f  ++ Aa+a++ a+++++g
  LPERR01G02360.1 49 SRYKGVVPQP-NGRWGAQIYE------RhSRVWLGTFADEDAAARAYDVAALRFRG 97
                     78****9888.8*********......44**********99*************98 PP

2B394.86e-30160258185
                      EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k+ tpsdv+k++rlv+pk+ ae+h               gg+  +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+
  LPERR01G02360.1 160 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrntaaaggdGGN-SKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLNAGDV 252
                      89************************************996444.6899********************************************* PP

                      EEEEE- CS
               B3  80 vvFkld 85 
                      vvF+ +
  LPERR01G02360.1 253 VVFSQS 258
                      ***944 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-1649106IPR016177DNA-binding domain
PfamPF008472.2E-74997IPR001471AP2/ERF domain
CDDcd000181.25E-1249107No hitNo description
Gene3DG3DSA:3.30.730.101.4E-1950106IPR001471AP2/ERF domain
PROSITE profilePS5103220.52150105IPR001471AP2/ERF domain
SMARTSM003801.0E-2550111IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-39155281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-30157273IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-28158268No hitNo description
PfamPF023629.5E-27160258IPR003340B3 DNA binding domain
SMARTSM010197.4E-21160271IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296160272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEQESMVFSC NSGGSTSMED DSFQELIVAG DGDDVPAAAE LPSSARPSSR YKGVVPQPNG  60
RWGAQIYERH SRVWLGTFAD EDAAARAYDV AALRFRGRDA VTNYNNNNHA GELAFLAAHS  120
KAEVVDMLRK HTYDDELRQG LRRGAARAQP TPPWAREPLF EKAVTPSDVG KLNRLVVPKQ  180
QAERHFPFPL RRNTAAAGGD GGNSKGVLLN FEDGDGKVWR FRYSYWNSSQ SYVLTKGWSR  240
FVREKGLNAG DVVVFSQSAL GMEKHLLIDC KKRRNNKQEV AADEARVVVK LFGVDIAGDK  300
GVVQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-4615727311117DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G02360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645486.11e-151PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-143Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0D9UWK30.0A0A0D9UWK3_9ORYZ; Uncharacterized protein
STRINGLPERR01G02360.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.28e-96related to ABI3/VP1 2