PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G01830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 317aa    MW: 33390.6 Da    PI: 7.3287
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G01830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.94.8e-314106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q
  LPERR01G01830.1   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQANATVFLAKFYGRAGLINLITAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      +++e +l++
  LPERR01G01830.1  98 SAVESVLRG 106
                      **9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381557.6E-981314IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.5773109IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQANATVF LAKFYGRAGL INLITAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQSAV ESVLRGMPIA QPPPSATAVP  120
PLPTCDIRHV GRRSGGAGTG VDHAGIADLH RIDTNSRAKF KRPGVAGGRS DNNHHAAAAF  180
ELVFSKPAAA MAVDVIRQAQ PLNWAPGAFS FHETTAAASD GAVPPESEDD HSNGGDTSDT  240
VDGSHVSHVS QTSEPEPRSA AVTEVHDAGL DLTLGLPPAP VKKTEPADSD SSRHDRMTEK  300
PVVIGLAISS SSKVAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-111FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643695.11e-168PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8862e-73LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0D9UWE10.0A0A0D9UWE1_9ORYZ; Uncharacterized protein
STRINGOB01G11830.11e-168(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-69LOB domain-containing protein 41