PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v2274940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 491aa    MW: 51791.6 Da    PI: 7.0968
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v2274940.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.31.1e-411222473115
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++       
  Lj6g3v2274940.1 122 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaph 215
                      5699****************************************************************99988888888888555555556666 PP

              TCP  89 ...........kaaksaakskksqksaasalnlakesr 115
                                 +      + +++ ++++ +l ++++ +
  Lj6g3v2274940.1 216 tfhgaalglahQ------SYEEAFQQHTPMLGFHHHRQ 247
                      666654433220......33333333333355555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-40126274IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496127181IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MELSDLQNNN NNNNRGTSTT HHPHHHQQEP SPSPPSSVFD GRQSAPFIMG SMSIQAGLTT  60
TSSSSSSSNS SSSSSPSASV SAPAPSQLID ASLAIATRSD PPTHQLTIAA PTPAPVTTVA  120
NPPKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA  180
ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHTFHGA ALGLAHQSYE EAFQQHTPML  240
GFHHHRQQLM SADQISEALP GDSSENYMRK RYREDLFKDD ANNQSSQQNE TGDGPSSPKQ  300
FKPDGGGGGS SSSASGLLRP SNLLPSAAMW AVAPAPAATV GGSTIWMLPV TAGGAVNSAS  360
DNQHTMWPFP PPPQAGGNAN NPAQLHFMQR FNLPTGGVGV EFQGGRSSGL QLGSMYQPPS  420
QHLGLAMSDS NLGMLAALNA YSNNNNNNRG FNVNSDHQTQ NHHHHSLEHQ HQAQPQPTTD  480
SGGEDGPNSS Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.199920.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v2274940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105210.0AP010521.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT39N07, TM1498, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592963.11e-155transcription factor TCP8 isoform X1
SwissprotQ9C5183e-89TCP8_ARATH; Transcription factor TCP8
TrEMBLG7INN61e-154G7INN6_MEDTR; TCP family transcription factor
STRINGAES632141e-155(Medicago truncatula)
STRINGAES632531e-155(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-79TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]