PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1931790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 312aa    MW: 34642.7 Da    PI: 5.1076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1931790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-174896355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + GVr+++ +gr++AeIrdp +   + r++lg+f+ta+eAa a+++a+++++g
  Lj6g3v1931790.1 48 FLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAQEAALAYDRAALSMKG 96
                     56******.**********843...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.6E-3247110IPR001471AP2/ERF domain
PROSITE profilePS5103220.647104IPR001471AP2/ERF domain
CDDcd000181.15E-2847103No hitNo description
Gene3DG3DSA:3.30.730.104.1E-2848104IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2048105IPR016177DNA-binding domain
PRINTSPR003671.1E-74859IPR001471AP2/ERF domain
PfamPF008474.3E-115096IPR001471AP2/ERF domain
PRINTSPR003671.1E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSTSRNSESF LKGYDPNQTQ INLSLLQRNT SPCSERRGRK KQADPGRFLG VRRRPWGRYA  60
AEIRDPATKE RHWLGTFDTA QEAALAYDRA ALSMKGSQAR TNFIYSDDTN LHNVLSPMNV  120
QALLPASQFH NNTQSTQPTN QNSLSHINTS NIGSSSGLNA ESAYGSPHDD NFFFSNDSSN  180
SGYLECIVPD NCFRPASSDQ KAGSSINTNT MQAQSHFDNI AFSQEASNMN FPSYPSELGQ  240
GLWGNQQSWD FNSSNELNSA MFHNPLRNEE GCMYAFCPIS DSPNYGPMTE AVSSTTTSFP  300
LFGDVDFEYS LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1948103359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-1938103571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1931790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098540.0AP009854.1 Lotus japonicus genomic DNA, clone: LjT18C07, TM1757a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368682.11e-138ethylene-responsive transcription factor LEP
SwissprotQ6J9Q23e-52ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLV7C7U91e-128V7C7U9_PHAVU; Uncharacterized protein
STRINGXP_007154243.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-48ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]