PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1880170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 235aa    MW: 26666.6 Da    PI: 7.7519
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1880170.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC143.45.2e-45391392100
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      + +fw++q   ie+++df nh+lPlarikki+kad++vkmi+aeaP+llskace+fi elt r+w++aeenkrrtl ksd a+a++rtd++dfl
  Lj6g3v1880170.1  39 IDNFWKTQsqeIENTNDF-NHALPLARIKKIMKADDEVKMIAAEAPILLSKACEMFIKELTTRAWVNAEENKRRTLLKSDFASAISRTDVYDFL 131
                      568**9997778888888.89************************************************************************* PP

            NF-YC  93 vdivprde 100
                      vdivpr+e
  Lj6g3v1880170.1 132 VDIVPRNE 139
                      ******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-2824131IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.6E-3460137IPR009072Histone-fold
PfamPF008081.6E-1960122IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTTNTQIAGG SSSSCYPRGQ LYPHQQIHQL QQQHLERRID NFWKTQSQEI ENTNDFNHAL  60
PLARIKKIMK ADDEVKMIAA EAPILLSKAC EMFIKELTTR AWVNAEENKR RTLLKSDFAS  120
AISRTDVYDF LVDIVPRNET MEHDVYAGIG MPPMRGNVAN VVQNVPPPLG PPHPYYYMPS  180
PASQHFGAAI PPRMVMARPP FAHPIYMQQP PYPYGLQVMH PAPQNLMMKN SPDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-373913719119HapE
4g92_C5e-373913719119HapE
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049600.0AP004960.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19B18, TM0139, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351229.13e-55PREDICTED: nuclear transcription factor Y subunit C-3-like
RefseqXP_008390839.13e-55PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8LCG72e-51NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
SwissprotQ9SMP02e-51NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLM1B8B62e-53M1B8B6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394707e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-50nuclear factor Y, subunit C1