PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1880150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 318aa    MW: 35954.7 Da    PI: 6.5088
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1880150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC141.71.8e-44711712100
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      l++fwe++   ie+  df nh++Plarikki+kad++v+ ++a+aPvl+sk ce+fi++lt+r+w++aeenkrrtl+ sdia+a++rt++fdfl
  Lj6g3v1880150.1  71 LNNFWETKckeIENPIDF-NHAFPLARIKKIMKADPNVNSVAADAPVLFSKVCEMFIMDLTMRAWMNAEENKRRTLQTSDIASAISRTEVFDFL 163
                      889**9986556666666.89************************************************************************* PP

            NF-YC  93 vdivprde 100
                      v ivp+de
  Lj6g3v1880150.1 164 VGIVPKDE 171
                      ******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.23E-2926163IPR009072Histone-fold
PfamPF008088.0E-2092154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.2E-3392169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDENQPEPEQ LEGGEDTPAQ EANVMHQSQP NQMTTHTQIV GGSSSSCYRR GQLYLHQHIH  60
RLQQQQLRRR LNNFWETKCK EIENPIDFNH AFPLARIKKI MKADPNVNSV AADAPVLFSK  120
VCEMFIMDLT MRAWMNAEEN KRRTLQTSDI ASAISRTEVF DFLVGIVPKD EKMEHDVYAG  180
IPPRTGNDVE VVQNVPPPLG TTHPYYAEVV QNVPGVQNVP PPLGTPHPYY AEVVQNVPAV  240
QNVPPPLGTP HPYYYVPAPP PHHFGSAIPP RMVMARPPFD HPIYRQQPPY PYAPQALQYA  300
APKHLMIENS PDSDETKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-336416912119HapE
4g92_C2e-336416912119HapE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049600.0AP004960.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19B18, TM0139, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-43nuclear factor Y, subunit C2