PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1694970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 321aa    MW: 35425.7 Da    PI: 6.8916
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1694970.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.95.5e-3451105155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Lj6g3v1694970.1  51 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 105
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.13448108IPR017930Myb domain
SuperFamilySSF466897.53E-1849105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-3250106IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2551106IPR006447Myb domain, plants
PfamPF002491.3E-953104IPR001005SANT/Myb domain
PfamPF143791.7E-23138184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MYHPKIQNVP SSTLIGSNSL VHGQHIDCGD STMDPGNGGN SLSNNSNLTS KQRLRWTHEL  60
HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL QKYRLAKYLP DSSSDEGKKA  120
DKKETGDMLS NLDGSSGMQI TEALKLQMEV QKRLHEQLEV QRQLQLRIEA QGKYLKKIIE  180
EQQRLSGVFS EAPADVCREP DNKTDPATPD PEKAAKQHAP AKSLSIESFS SHHEPMTPDS  240
ACHVGSPADS PKEERSAKKQ RVSMDGAYSK PDIVLPHQIL ESSMPSYQQP TTVFLTQEHF  300
DSSLGISTRS EELEKIGGSN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2351108158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2351108158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2351108158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2351108158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-2351108259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.22020.0floral bud| pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1694970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1374560.0BT137456.1 Lotus japonicus clone JCVI-FLLj-12O19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361390.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_027361412.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW01e-123PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLI3SAF90.0I3SAF9_LOTJA; Uncharacterized protein
STRINGGLYMA15G12940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-108G2-like family protein