PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1589790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 466aa    MW: 51297.4 Da    PI: 6.613
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1589790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.7e-31238296259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Lj6g3v1589790.1 238 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 296
                      699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925232298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-31232298IPR003657WRKY domain
SuperFamilySSF1182903.4E-26235298IPR003657WRKY domain
SMARTSM007741.4E-37237297IPR003657WRKY domain
PfamPF031061.0E-25239296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MCSIFVSTMD NNYQFGDLTD ILRASGGTSS SPEPPAPPQP PHHHQNHWHQ HQNQHQLQHQ  60
FSSDPMIFNN FGDPFSTFRD PLLLQDLDIP SVSSYFNTST TDSGGLEQAV VAASGFGGVI  120
SGNSATNNTN VSASSVFAHK VVEDNHDMMR RPCKNIFSNM IQISPNCNAK LPGSYDSSST  180
SSPAPRPIKP SAVISPNINI NAPRNPGLKR RKNQAKKVVC IPAPAAANSR QTGEVVPSDL  240
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT SEHNHPWPTQ  300
RNALAGSTRS QPSKSNNAAS KSSEIFDSQK GTLTKPKEEH EQESNSEGNN SPGVAAGNSS  360
NSVKEEMEDM EMKQLENMED GEFSDGIGIP YKPSMIGSNN QQSEDFFAEL GEIEADPLNL  420
LFTQGFGHAP DEHQRESTKA IDPFHIFDWS NTTNTNSFDE PNKRRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25212299280Disease resistance protein RRS1
5w3x_D4e-25212299280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1589790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150386e-64AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339111.10.0probable WRKY transcription factor 14
TrEMBLV7BN460.0V7BN46_PHAVU; Uncharacterized protein
STRINGXP_007147420.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.12e-83WRKY DNA-binding protein 14