PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1697860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 307aa    MW: 33678.4 Da    PI: 6.6481
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1697860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.43.9e-343993155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl
  Lj5g3v1697860.1 39 KPRLRWTTDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 93
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-333694IPR009057Homeodomain-like
PROSITE profilePS5129411.2063696IPR017930Myb domain
SuperFamilySSF466891.02E-163995IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-243994IPR006447Myb domain, plants
PfamPF002493.8E-84192IPR001005SANT/Myb domain
PfamPF143791.5E-12134178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MFSRLISPHE GAMVQEDMQG GVNHTHLGDP CLVLTSDPKP RLRWTTDLHE RFVDAVTQLG  60
GPSKATPKAI MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDDGGKDASY PLESPGTDNS  120
SPMLPASDAN EGHEVKEALR AQMEVQSKLH LLVEAEKHLQ IRQDAEQRYM AMVERACKML  180
ADQFIGNTIL DSDSQKLQGL ENRAPTSSLV DSLGFCSLPG SMVGGMHVSE VPHILQPQGV  240
DYSTESCLTS LESLRGLALE GSPGGTKKRM LSLDSMVVPL IWSETNMRTQ GFHLAQVNPQ  300
GITRYGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-193995157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-193995258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1697860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511136.10.0protein PHR1-LIKE 2 isoform X4
RefseqXP_017437289.10.0PREDICTED: protein PHR1-LIKE 2-like isoform X2
SwissprotQ94A572e-66PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A1S3UYI10.0A0A1S3UYI1_VIGRR; protein PHR1-LIKE 2 isoform X4
STRINGGLYMA10G34050.31e-180(Glycine max)
STRINGXP_007144235.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-59G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]