PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1473470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 260aa    MW: 28879.8 Da    PI: 5.9649
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1473470.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.7e-55791821101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   i+k++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdf
  Lj5g3v1473470.1  79 QLQAFWANQyqeIDKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDF 172
                      89******998999******************************************************************************** PP

            NF-YC  92 lvdivprdel 101
                      lvdivpr++l
  Lj5g3v1473470.1 173 LVDIVPREDL 182
                      *******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.04E-3359173IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.6E-3893165IPR009072Histone-fold
PfamPF008081.3E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDHQGHGQNP SMGVGGSGPQ MTYGSNPYLQ NPLTGPPGMV VSSAGNVQST GQPVGTQMGH  60
PQLAYQHIHQ QQQQQLQQQL QAFWANQYQE IDKVSDFKNH SLPLARIKKI MKADEDVRMI  120
SAEAPVVFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE  180
DLKDEVLATM PGGAMPVAGP GDGLPYCYMP PQHAQQVGPG GVMMHKPVMD PNMYAMQPDP  240
FMAPQMWLQP PEQQQSSPDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B7e-41941791297NF-YC
4awl_C5e-4194179994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B5e-4194179994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.76640.0cell culture| pod| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1427230.0BT142723.1 Lotus japonicus clone JCVI-FLLj-15C23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968567.11e-152PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_015968568.11e-152PREDICTED: nuclear transcription factor Y subunit C-9
RefseqXP_016205500.11e-152PREDICTED: nuclear transcription factor Y subunit C-9-like
SwissprotQ8L4B22e-82NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
SwissprotQ9ZVL32e-82NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLI3SQH50.0I3SQH5_LOTJA; Uncharacterized protein
STRINGGLYMA19G42460.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.34e-72nuclear factor Y, subunit C3