PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v0816340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family E2F/DP
Protein Properties Length: 470aa    MW: 51362.4 Da    PI: 5.0671
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v0816340.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-26149214171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Lj5g3v0816340.1 149 RYDSSLGLLTRKFINLIKHAEDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIHWKG 214
                      6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-28147216IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.72E-17148212IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.6E-34149214IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.7E-24151214IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440749.68E-33227331No hitNo description
PfamPF164211.0E-33230329IPR032198E2F transcription factor, CC-MB domain
CDDcd146601.63E-47230331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSSTAGASDN RATPPLQPPN RPPLKRHLAF ASTKPPFAPP DDYHTFSAAA TTAAGPDSRR  60
GAHHEPEAVV VRSPFIKRKN GMNNNEGDSQ KWGNSPGGTN VMNSPFKTPV SAKGGRTHKL  120
KVSKEGRSCP PTPISNAGSP SPLTPANNRY DSSLGLLTRK FINLIKHAED GMLDLNKAAE  180
TLEVQKRRIY DITNVLEGIG LIEKKLKNRI HWKGIESSTP GAVDGDISML KAETEKLSSE  240
EQRLDDQIRE MQEKLRSLSE NENNQKCLFV TEEDIKAVPC FQNETLIAIK APHGTTLEVP  300
DPEEAVDYPQ RRYRIILRST MGPIDVYLIS QFEEKFEEIN GAEPPISLPL ASSSGSNEQL  360
VTETVPTEFS GIGLEPQAQL SSQGYSDLNA SQEFAGGMMK IVPSDADNDS DYWLLSDAEV  420
SITDMWKTDA SVDWNGVDML HPDFGLVSRP QTPSSGFAEA PPTAANSNQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-24142215274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00293DAPTransfer from AT2G36010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145806.10.0hypothetical protein PHAVU_007G269500g
SwissprotQ9FNY01e-166E2FA_ARATH; Transcription factor E2FA
TrEMBLV7BL690.0V7BL69_PHAVU; Uncharacterized protein
STRINGGLYMA02G35850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-168E2F transcription factor 3