PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2616130.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 264aa    MW: 29459.8 Da    PI: 5.4511
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2616130.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64.1e-3187145259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY++eHnh+
  Lj4g3v2616130.2  87 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTMLVVTYSSEHNHP 145
                      69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-3279147IPR003657WRKY domain
SuperFamilySSF1182904.84E-2783147IPR003657WRKY domain
SMARTSM007741.8E-3786146IPR003657WRKY domain
PROSITE profilePS5081132.59287147IPR003657WRKY domain
PfamPF031061.2E-2688145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDSKFSNNRH RYINELLEED AEVAHHHQEN IADSPPSSTA FNIDGLVTSS STSSAKRRRA  60
IQKRVVQIPI KETEGSRLKA ENNTPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA  120
RKQVERSRAD PTMLVVTYSS EHNHPWPVSR SNNQAKPAAK KPEPEPEPVE PEEKLEDLGG  180
ENELGWLGVE METASSAAAM LESPIMAPEF DEADVASVFL PMREEDELLF ADLGELPECS  240
AVFRHGLVDV RRRLATPWCG TTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-21881481880Disease resistance protein RRS1
5w3x_D6e-21881481880Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.76140.0cell culture| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2616130.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585175.11e-123WRKY transcription factor 48 isoform X1
RefseqXP_028243594.11e-123probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP561e-73WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A371GXJ31e-123A0A371GXJ3_MUCPR; Putative WRKY transcription factor 65
STRINGGLYMA08G12460.11e-122(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-73WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]