PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2120330.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 345aa    MW: 38083.1 Da    PI: 7.7851
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2120330.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483e-1599150155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Lj4g3v2120330.2  99 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 150
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-61370IPR001471AP2/ERF domain
CDDcd000187.10E-131365No hitNo description
PROSITE profilePS5103211.7191564IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-102865IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-93164IPR001471AP2/ERF domain
CDDcd000185.83E-2699160No hitNo description
PfamPF008473.8E-1099150IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1899160IPR016177DNA-binding domain
SMARTSM003801.5E-33100164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18100159IPR001471AP2/ERF domain
PROSITE profilePS5103219.045100158IPR001471AP2/ERF domain
PRINTSPR003679.9E-5101112IPR001471AP2/ERF domain
PRINTSPR003679.9E-5140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTLLCFFFSY LVPWRMIAHP WDPLLAHYVV SVYLGGYDKE EKAARAYDLA ALKYWGPTTT  60
TNFPICNYEK ELEEMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  120
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSIANS NLPIGGLSSK  180
NNKNSTADSH SDQSKSDERD PSSASSSGNF TPSSSNTLSF AIPIKQDTNT TTSDYYSTLL  240
GFHNNNTVPF HMDYSSGAPS SNNNNDNSAA QFLSSGILMQ QQQHGGSSST VSSSSSSVVT  300
LATPVFSLNS YENGYGNWMG PTLHNSTFQS HAKPSLFQTP IFGME
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.126630.0cell culture| protoplast
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758571e-141HM775857.1 Glycine max aintegumenta-like 5 mRNA, complete cds.
GenBankKT0310931e-141KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505771.11e-148PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-101AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0R0F9G41e-152A0A0R0F9G4_SOYBN; Uncharacterized protein
STRINGGLYMA13G00950.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-91AINTEGUMENTA-like 5