PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0336820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 188aa    MW: 21887.3 Da    PI: 4.787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0336820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.43.3e-37111301128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeelvv++L++k++  + +  +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r         +nr+t++gyW a g +++v++
  Lj4g3v0336820.1  11 LPPGFRFYPTDEELVVHFLHRKASLLPYHP-DVIPDLDLYPYDPWQLHGRALEEGNQWYYYSRRT--------QNRITSNGYWVAMGMEEPVVA 95 
                      79*************************998.99**************977778899******984........589****************99 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ vg+kk  vf+ g+ap+g+kt+W+m+eyrl
  Lj4g3v0336820.1  96 SsSNKRVGMKKYYVFHVGQAPDGNKTNWIMQEYRL 130
                      867778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-487155IPR003441NAC domain
PROSITE profilePS5100546.33311157IPR003441NAC domain
PfamPF023653.0E-2212130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGENNNNVNN LPPGFRFYPT DEELVVHFLH RKASLLPYHP DVIPDLDLYP YDPWQLHGRA  60
LEEGNQWYYY SRRTQNRITS NGYWVAMGME EPVVASSSNK RVGMKKYYVF HVGQAPDGNK  120
TNWIMQEYRL PDSASSSRTS RRKTDHSKWV ICRVYEMDDD QDGDGTELSC LDEVFLSLDD  180
LEEVSLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-421015619167NAC domain-containing protein 19
3swm_B7e-421015619167NAC domain-containing protein 19
3swm_C7e-421015619167NAC domain-containing protein 19
3swm_D7e-421015619167NAC domain-containing protein 19
3swp_A7e-421015619167NAC domain-containing protein 19
3swp_B7e-421015619167NAC domain-containing protein 19
3swp_C7e-421015619167NAC domain-containing protein 19
3swp_D7e-421015619167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0336820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104231e-144AP010423.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT16M14, TM1779, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531051.11e-106NAC domain-containing protein 104
RefseqXP_028247050.11e-106NAC domain-containing protein 104-like
SwissprotQ8GWK61e-85NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0B2S4H51e-104A0A0B2S4H5_GLYSO; NAC domain-containing protein 104
TrEMBLI1KR611e-104I1KR61_SOYBN; Uncharacterized protein
STRINGGLYMA08G08010.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-80xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]