PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3214340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 316aa    MW: 34483.3 Da    PI: 6.7754
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3214340.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.85.7e-19133186155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv++v++L G+++A+      + +   Lt+e+v+SHLQkYRl
  Lj3g3v3214340.1 133 RPRLVWTPQLHKRFVDVVAHL-GIKNAVAEDDHAVDERGRLTRENVASHLQKYRL 186
                      59*******************.*********999999999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.29E-12130190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-19132191IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-15134186IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGEEVRMMDE ERLMEWEKGL PSVHDLTPLS QPLIPPELAT AFSISPEPRR TLLDVNRASR  60
NTLSILRSGG APLQALSSSD EEGEGGGGGG EEDDTTDRDG SGGSGSRKQR KVDCAAEEAD  120
SAVRTTDTAT LKRPRLVWTP QLHKRFVDVV AHLGIKNAVA EDDHAVDERG RLTRENVASH  180
LQKYRLYLKR MQGLSNEGPS SSDHLFASTP VPQSLHDSAA AAVAATAHSN SHSQTHSHSH  240
GHGNSSHLPV PIPMPYPPPM MSMPFHGMPH LHHGHGHMGM PLPSSSATSS YRSQYPFNML  300
HQRDWPHPHL APNDNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-22133189157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.140340.0cell culture| protoplast
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3214340.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406245.11e-120PREDICTED: transcription factor PCL1-like
SwissprotQ9SNB41e-69PCL1_ARATH; Transcription factor LUX
TrEMBLA0A0L9T7Z01e-119A0A0L9T7Z0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SDA01e-119A0A0S3SDA0_PHAAN; Uncharacterized protein
STRINGVIT_06s0004g05120.t011e-111(Vitis vinifera)
STRINGGLYMA12G06406.21e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.22e-65G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]