PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2949670.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family E2F/DP
Protein Properties Length: 293aa    MW: 32404.6 Da    PI: 5.5463
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2949670.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27136201171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++l++++e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Lj3g3v2949670.2 136 RYDSSLGLLTKKFINLIKQAEDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 201
                      6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-30133203IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-34136201IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-17136199IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.0E-25138201IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.42E-35212291No hitNo description
SuperFamilySSF1440742.25E-25215291No hitNo description
PfamPF164211.0E-23217291IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSGKRPPPAA ADPPDQIMHS MKRQLPFVAA ASGDYHRFTP DRRRNPDQVA EAIVVKTPQL  60
KRKNEAADFE ADSGDRMNPG STETAISPFQ TPLSGKMGKG GKSSRLTKCI KSATQTPGPN  120
IGSPSANNLT PAGSCRYDSS LGLLTKKFIN LIKQAEDGML DLNKAAETLE VQKRRIYDIT  180
NVLEGIGLIE KKLKNRIQWK GLDVSRPGQG DDSFGSLQTE VENLTIEERQ LDEQIREMQE  240
RLRDLSEDEN NEKLLFVTEE DIKKLPGFQN ETLIAIKAPH GTTLEVPDPD EVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-26131202274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004506214.11e-173PREDICTED: transcription factor E2FB isoform X1
SwissprotQ9FV711e-106E2FB_ARATH; Transcription factor E2FB
TrEMBLK7LQ431e-172K7LQ43_SOYBN; Uncharacterized protein
STRINGGLYMA11G18401.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-101E2F transcription factor 1