PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2823270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 285aa    MW: 32363.2 Da    PI: 8.171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2823270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.2e-33491891128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G++F+Ptd+e++ e+L++kv+++       ++++  +++   +i+ ++P++Lp  v ++ +  +fF++ +k+y+tg+rk+r+++      +
  Lj3g3v2823270.1  49 LPAGVKFDPTDQEIL-EHLEAKVRSDIhmlhplIDEFIpTLEGEnGICCTHPEKLP-GVGKDGQIRHFFHRPSKAYTTGTRKRRKVHtdsdgsE 140
                      799***********9.99*****99986664432222222333336**********.566666777******************7444465557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                       +W++tgk+++v+  +g+l+g kk+Lv+y++  +++k+ekt+Wvmh+y+l
  Lj3g3v2823270.1 141 TRWHKTGKTRPVYI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 189
                      88************.999***********5444788889*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3744208IPR003441NAC domain
PROSITE profilePS5100532.70449208IPR003441NAC domain
PfamPF023651.5E-1550189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTAECSYPED NDSIIVERRK DSLIRTCPTC GHHVKYQDQG GGIHDLPGLP AGVKFDPTDQ  60
EILEHLEAKV RSDIHMLHPL IDEFIPTLEG ENGICCTHPE KLPGVGKDGQ IRHFFHRPSK  120
AYTTGTRKRR KVHTDSDGSE TRWHKTGKTR PVYISGKLKG YKKILVLYTN YRKQRKPEKT  180
NWVMHQYHLG NNEEEKEGEL VVSKVFYQTQ PRQCGGSGSL IKDSFPAKVL NGHDQVANHN  240
HNNSGYVEYY SNASSFISFD QGEQQHRSNN AQVISHFDGA PFINP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2823270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229460.11e-164NAC domain-containing protein 73
RefseqXP_029129599.11e-164NAC domain-containing protein 73
SwissprotO494591e-116NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A151SF001e-163A0A151SF00_CAJCA; NAC domain-containing protein 8
STRINGXP_004487194.11e-162(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-106NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]