PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2827780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 167aa    MW: 18604 Da    PI: 4.8734
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2827780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601346e-4281071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+lrr+Ca+dC+++pyfp+++p+kfa+vhk+FGasn + +l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +l
  Lj2g3v2827780.1   8 PCASCKLLRRRCAQDCIFSPYFPSDDPQKFAIVHKVFGASNNSTMLQELPFDQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQL 101
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Lj2g3v2827780.1 102 AVAQAE 107
                      *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.9267108IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-418105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGGSGNSPCA SCKLLRRRCA QDCIFSPYFP SDDPQKFAIV HKVFGASNNS TMLQELPFDQ  60
RADAVSSLVY EAHARVRDPV YGCVGAISYL QNQVSELQMQ LAVAQAEILC IQMQNEPVMP  120
NPELDLDQKS YLLQNDLPQY LNYTSSSNVI HHDSLSRESI FGHDMVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552226.11e-100PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0B2PB861e-102A0A0B2PB86_GLYSO; LOB domain-containing protein 12
STRINGGLYMA18G02780.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-77LBD family protein