PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0738560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 114aa    MW: 12355.4 Da    PI: 8.996
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0738560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.49.3e-2816112192
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC+++p++     pa+q++++ +++k++G++ +l+ll+++p++ ++++++sl+yeA+ r+ +P+ G++g++++++++l++
  Lj2g3v0738560.1  16 SCNGCRVLRKGCSPDCPIRPCLnwidsPASQANATFFLAKFYGRAGLLNLLTSAPQQLQPAVFKSLLYEACGRIVNPIFGSTGLLSTGSWHLCE 109
                      6********************************************************************************************9 PP

           DUF260  90 lka 92 
                      +++
  Lj2g3v0738560.1 110 AAV 112
                      875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.47215114IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-2316112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MCSSPFNKKI QTMRLSCNGC RVLRKGCSPD CPIRPCLNWI DSPASQANAT FFLAKFYGRA  60
GLLNLLTSAP QQLQPAVFKS LLYEACGRIV NPIFGSTGLL STGSWHLCEA AVNA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.209170.0cell culture| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0738560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966681.14e-58LOB domain-containing protein 41
RefseqXP_025701105.15e-58LOB domain-containing protein 41
SwissprotQ9ZW962e-53LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A445D2Q91e-56A0A445D2Q9_ARAHY; Uncharacterized protein
STRINGXP_007151649.13e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-55LOB domain-containing protein 40