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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4699740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRF | ||||||||
Protein Properties | Length: 383aa MW: 41881.4 Da PI: 8.2606 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.7 | 6.7e-26 | 140 | 183 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrg++rsrk++e Lj1g3v4699740.1 140 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGKNRSRKPVE 183 79***************************************987 PP | |||||||
2 | QLQ | 51 | 4.5e-18 | 71 | 107 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a+ vPpeLlq+i+k Lj1g3v4699740.1 71 SYFSLSQWQELELQALIFRYMLAGTSVPPELLQPIKK 107 78*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-10 | 71 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-13 | 72 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.083 | 72 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.463 | 140 | 184 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.4E-22 | 141 | 183 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MDFHLKQWRN QHESEEQQHS SKMPKLLPEP PSTASALPLF VPEPNSKVSN LSDSSTFPST 60 TTTNRFPRMA SYFSLSQWQE LELQALIFRY MLAGTSVPPE LLQPIKKSLL HSPSFFLHHP 120 LQHYQPTLLQ SGYWGRAAMD PEPGRCRRTD GKKWRCSRDV VAGQKYCERH MHRGKNRSRK 180 PVELPTPTSA GGGAGVGGGS FCASSSTSSP PLVTASMKSP FDLLHLNERS SGTKKEDKSL 240 FESQDHVSGD GRSGGHMLRH FFDDWPRSLQ DSDNNNAENN TGRVNSSTCL SISMPGNTSS 300 SDVSLKLSTG YGGSEDPGTR SENMGMEAEQ VQLNWAGGWA SSGNHSMGGP LAEALRSSTS 360 TSSPTSVLHQ LHRGSGSETS FIS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC196856 | 2e-53 | AC196856.3 Medicago truncatula chromosome 7 BAC clone mth2-33h9, complete sequence. | |||
GenBank | AC170988 | 2e-53 | AC170988.5 Medicago truncatula chromosome 7 BAC clone mth2-53m12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162865.1 | 0.0 | hypothetical protein PHAVU_001G187500g | ||||
Swissprot | Q8L8A7 | 1e-100 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | V7CXL5 | 0.0 | V7CXL5_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA19G37740.1 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 2e-95 | growth-regulating factor 4 |