PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3904220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 451aa    MW: 49672.8 Da    PI: 5.32
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3904220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11267309754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Lj1g3v3904220.1 267 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 309
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-17263330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9266309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-13267313No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15267322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.76E-6380421No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEGFTLPLPP RPHTTTLQWM EQQQQQQQQQ QQQLVEAKHH NEDDIAIAIA MAGGTPLHFF  60
KPMPESEPDY YNISSAIANT NGVNINNPFA SISNPATTDS FVMHQTLNMD SFNLDPSNSQ  120
GFFNSNSFET GFDSGFFMGG SSNASNSPAL MGFSQGNQMG TLDLSSCSEF PPPGLELEGF  180
GAPRALEAAQ QPTLFQKRRG SVEISRLETV RKKGRKWEDG DVEADFDDSG LNYESDENGN  240
DLNSNATTVS GGDHKGKKKG LPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG  300
DAIDYLKELL QRINDLHNEL ESTPPGSALP PSSSFHPLTP TPQTLPCRVK EELYPGALPS  360
PKNQPVKVEV RVREGRAVNI HMFCTRRPGL LLSTMKALDN LGLDVQQAVI SCFNGFALDV  420
FRAEQCTEGQ DVLPEQIKAV LLDSAGYPGM V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256274KKKGLPAKNLMAERRRRKK
2268275ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.44380.0flower| pod
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1442490.0BT144249.1 Lotus japonicus clone JCVI-FLLj-23K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493069.11e-159PREDICTED: transcription factor ICE1 isoform X2
SwissprotQ9LSE21e-135ICE1_ARATH; Transcription factor ICE1
TrEMBLC0JP290.0C0JP29_LOTJA; Putative basic helix-loop-helix protein BHLH23
STRINGGLYMA16G05390.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-132bHLH family protein