PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3443950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 267aa    MW: 29563 Da    PI: 9.1106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3443950.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.1e-3283139258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h
  Lj1g3v3443950.1  83 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPETLIITYEGLHLH 139
                      8******************************************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.39377142IPR003657WRKY domain
SuperFamilySSF1182907.85E-2780139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-3080139IPR003657WRKY domain
SMARTSM007748.7E-3682141IPR003657WRKY domain
PfamPF031062.0E-2683139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQPEPNNTII RAVSRDQAFN YRFISNIYSG PTISDIENAL SVTTNKTEHF SASARVSILE  60
RNLSKIENKY TLKIKCFGNG MGDDGYKWRK YGQKSIKNSP NPRSYYRCTN PRCSAKKQVE  120
RSNEDPETLI ITYEGLHLHF AYPCFLVGQP QQSQSHPPVK KSKFTSSQVQ AQAQAQDFIV  180
NEAQASASVG LTSPTLLNSP QDMAQQNLGS QGLLEDMVPF MVRNPSNNLN SGYSKLSCSA  240
DPSPTSPPLW TSGHSTSFHT VGLNSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21831391571WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.77650.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3443950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061030.0AP006103.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT11J24, TM0185, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028240309.11e-135probable WRKY transcription factor 49 isoform X2
SwissprotQ9FHR74e-48WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A445JWC01e-134A0A445JWC0_GLYSO; Putative WRKY transcription factor 49
STRINGGLYMA07G16040.21e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-48WRKY DNA-binding protein 49