PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2953600.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 251aa    MW: 28211 Da    PI: 6.9099
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2953600.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.53.2e-19211249138
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v
  Lj1g3v2953600.2 211 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQV 249
                      58***************************99*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-19196249IPR003657WRKY domain
SuperFamilySSF1182906.15E-17204249IPR003657WRKY domain
PROSITE profilePS5081119.026206251IPR003657WRKY domain
SMARTSM007745.5E-10211251IPR003657WRKY domain
PfamPF031061.2E-16212249IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSKNSSPSGS EIEEKRVTSV FLDDGFSNQE VKKVERLKSA KAEMGEVKEE NERLKMMLNQ  60
VEKDYHSLQL RFFDILHKEV SNKGVAENSP TPHDHENEEP ELVSLCLGRG PRESKKGAII  120
EKLNQPREKE DVEVNLSLGL ESKYLLSMEV VSDLSPVNSS EELPKEVELA EGTLKTNKSA  180
KVVNVNDDIS DQMPAKKARV SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA  240
PACPVRKQVY A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.183140.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2953600.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462310.0BT146231.1 Lotus japonicus clone JCVI-FLLj-21B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489160.11e-118probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-60WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLI3T0I30.0I3T0I3_LOTJA; Uncharacterized protein
STRINGXP_004489160.11e-117(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-53WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]