PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v1969400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 301aa    MW: 32894.2 Da    PI: 9.9789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v1969400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30223280258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       D+y+WrKYGqK++kg+++pr+YY+C++  gCp++k+ver+++dp ++++tYe+eH+h
  Lj1g3v1969400.1 223 ADEYSWRKYGQKPIKGTPYPRGYYKCSTVrGCPARKHVERATDDPAMLIVTYEDEHDH 280
                      69************************9888***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-16178220IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.5E-32210281IPR003657WRKY domain
PROSITE profilePS5081130.549217283IPR003657WRKY domain
SuperFamilySSF1182907.72E-26220282IPR003657WRKY domain
SMARTSM007742.4E-35222282IPR003657WRKY domain
PfamPF031069.8E-26224280IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTVELMGFPQ MDQQKKAIQE AANEGLKGME HLINLLSHQP SHLQTDLTDV TVSNFKKLIS  60
LLNRTGHARF RRAPLPSTPT PPQPNPIAVH HPKPTVAQSL TLDFTKPNNF LTSNAKSLEL  120
EFSKETTTFS VSSNSSFLSS AITGDGSVSN GKLGSSIFLT PAVSAGGKPP LSSTTPSKKR  180
CHEHSGDPSG SNTKCHCTKR RKNRVKKTIR VPAVSSKVAD IPADEYSWRK YGQKPIKGTP  240
YPRGYYKCST VRGCPARKHV ERATDDPAML IVTYEDEHDH GIQTAMHDNI SGAVGFVYES  300
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21210282273WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.150880.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v1969400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348314.11e-154WRKY transcription factor 50
RefseqXP_028228137.11e-154probable WRKY transcription factor 17
SwissprotQ9SV151e-115WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A371H8691e-156A0A371H869_MUCPR; Putative WRKY transcription factor 11 (Fragment)
STRINGXP_004498566.11e-141(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-107WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  3. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ali MA,Wieczorek K,Kreil DP,Bohlmann H
    The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.
    PLoS ONE, 2014. 9(7): p. e102360
    [PMID:25033038]
  6. Jiang CH, et al.
    Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.
    J. Exp. Bot., 2016. 67(1): p. 157-74
    [PMID:26433201]
  7. Ali MA, et al.
    Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis.
    J. Plant Physiol., 2018. 226: p. 12-21
    [PMID:29689430]